PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01793.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 163aa    MW: 18075.4 Da    PI: 5.011
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01793.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26076.93.5e-246107297
                   DUF260   2 CaaCkvlrr.kCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvil 81 
                              CaaCk+  +  C+    + C++ap fp+++p kf  v+k+FG+ nv k+l+ l ++ +re a+++l+yeAear++dP++G + + l
  Rsa1.0_01793.1_g00002.1   6 CAACKFTSNgPCTlgngDACIMAPFFPSTEPDKFDRVNKVFGVVNVYKILSILeEPLQREYAVNALCYEAEARIQDPIHGNYDLKL 91 
                              ******98878*8554467**********************************45556**************************** PP

                   DUF260  82 klqqqleqlkaelall 97 
                              ++ + l++ k +++++
  Rsa1.0_01793.1_g00002.1  92 AYDNILNKFKRDIDSA 107
                              *999999999888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7844111IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-236106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDLAICAACK FTSNGPCTLG NGDACIMAPF FPSTEPDKFD RVNKVFGVVN VYKILSILEE  60
PLQREYAVNA LCYEAEARIQ DPIHGNYDLK LAYDNILNKF KRDIDSAINE LEIPTDKDQK  120
NQLKRLVDAR RNAIIGMREN EQGGVHRADG ASTSSGPANQ NQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597302.13e-72PREDICTED: LOB domain-containing protein 35-like
SwissprotO496511e-27LBD32_ARATH; LOB domain-containing protein 32
TrEMBLA0A0D3DFG38e-70A0A0D3DFG3_BRAOL; Uncharacterized protein
STRINGBra019364.1-P4e-61(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.17e-29LOB domain-containing protein 32